I obtained a small Comet some time ago and over the past few weeks it also started to loose it's colour. It is now almost completely a pale pinky sort of white.
At first I was concerned although it seemed happy and healthy enough, so I inquired from our very helpfull Pet shop owner who asked me if I had changed it's diet. I had in fact changed to another brand of goldfish food.
It turns out that the original whole-sale suppliers feed the goldfish on a diet rich in colouring to make the fish more attractive to prospective buyers. Some goldfish foods apparently do not contain this colouring agent, so the fish gradually change back.
As I have stated in a previous post on this subject, I don't really mind what colour my fish is as long as it's happy and healthy. I also have the choice of feeding it a different diet in the future and changing it's colour! (Like having a different fish every few months).