brown algae is actually a bacteria (cyanobacteria) but it acts in much the same way that algae doeas and isnt harmful. to me, both green and brown are pretty much the same. they will both help by eating up a little nitrates, phosphates and sylicates. you can pretty much clean it at your leisure.
if i had to/could pick one that id let gow on things, id go with green beard algae. i looove the way it wafts in the current of the water and its very crisp and clean looking.
paul