Hi Tricia, and

!
Such a big pond sounds like fish heaven!! And yes, koi and goldfish can interbreed with each other. To find out which of the babies are koi and which are goldfish, all you have to do is look at their faces, around the mouth area. Koi have barbels, one one each side of the mouth, while goldfish don't have them.
As for color, some fry are faster, some are slower when it comes to changing color. Anywhere from 1 month to even a year it can take.
The goldfish sound like there were big enough to breed. 6 inch is a nice size for an adult fish, they can breed already when they are smaller than that.....
Have pics of your pond and fish? Photobucket.com is a great, and free, photo hosting site.....